../../tmp/servers/virsirnadb/1801220578
Result for your query siRNA sequence
| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | Strain name | Start | Alignment | End | % Identity |
| Query | virsi1834 | 1 | gtacagggataaacattac | 19 | |
| M33854.1 | CXA3CG Coxsackievirus B3 (CVB3) complete genome | 6735 | ................... | 6753 | 100 |
| M88483.1 | CXAB3CG Coxsackievirus B3 mRNA, complete genome | 6736 | ................... | 6754 | 100 |
| AF231763.1 | Coxsackievirus B3 strain 31-1-93, complete genome | 6736 | ................... | 6754 | 100 |
| AF231764.1 | Coxsackievirus B3 strain P, complete genome | 6736 | ................... | 6754 | 100 |
| AF231765.1 | Coxsackievirus B3 strain PD, complete genome | 6736 | ................... | 6754 | 100 |
| AY752945.1 | Human coxsackievirus B3 strain 0, complete genome | 6736 | ................... | 6754 | 100 |
| AY752946.1 | Human coxsackievirus B3 strain 20, complete genome | 6736 | ................... | 6754 | 100 |
| AY843298.1 | Human enterovirus 80 strain USA/CA67-10387, complete genome | 6764 | ................... | 6782 | 100 |
| EU147493.1 | Human coxsackievirus B1 isolate CVB1Nm polyprotein gene, complete cds | 6729 | ................... | 6747 | 100 |
| AY752944.2 | Human coxsackievirus B3 strain 28, complete genome | 6736 | ................... | 6754 | 100 |
| HM775882.1 | Human echovirus 5 isolate Kor06-ECV5-253cn, complete genome | 6765 | ................... | 6783 | 100 |
| X84981.1 | Echovirus 9 (strain Hill), complete genome | 6757 | .................._ | 6774 | 94 |
| AY302541.1 | Human echovirus 15 strain CH 96-51 complete genome | 6773 | .................._ | 6790 | 94 |
| M16572.1 | CXA3G Coxsackievirus B3, complete genome | 6734 | .......a........... | 6752 | 94 |
| AF230973.1 | AF230973 Enterovirus Yanbian 96-83csf, complete genome | 6735 | .........c......... | 6753 | 94 |
| AF524867.1 | Human echovirus 9 isolate DM, complete genome | 6790 | ...............c... | 6808 | 94 |
| AY302542.1 | Human echovirus 16 strain Harrington complete genome | 6769 | .........c......... | 6787 | 94 |
| AY302546.1 | Human echovirus 20 strain JV-1 complete genome | 6730 | ............g...... | 6748 | 94 |
| AY302551.1 | Human echovirus 27 strain Bacon complete genome | 6747 | ......a............ | 6765 | 94 |
| AY302557.1 | Human echovirus 4 strain Pesacek complete genome | 6730 | ............g...... | 6748 | 94 |
| AY843301.1 | Human enterovirus 83 strain USA/CA76-10392, complete genome | 6730 | ............g...... | 6748 | 94 |
| AY843303.1 | Human enterovirus 85 strain BAN00-10353, complete genome | 6757 | ......a............ | 6775 | 94 |
| FJ357838.1 | Human coxsackievirus B3 strain GZ803, complete genome | 6738 | ...t............... | 6756 | 94 |
| GU109481.1 | Human coxsackievirus B3 strain SSM-CVB3, complete genome | 6733 | ...............c... | 6751 | 94 |
| U57056.1 | CXU57056 Coxsackievirus B3 Woodruff variant, complete genome | 6736 | .........c........_ | 6753 | 89 |
| AF317694.1 | Human echovirus 18 strain Metcalf polyprotein gene, complete cds | 6746 | ......a..........._ | 6763 | 89 |
| AF317694.1 | Human echovirus 18 strain Metcalf polyprotein gene, complete cds | 3504 | _.c....a.c......... | 3521 | 78 |
| AY186745.1 | Human coxsackievirus B1 clone pMP1.24 polyprotein gene, complete cds | 6708 | _..............c... | 6725 | 89 |
| AY186746.1 | Human coxsackievirus B1 clone pMP1.23 polyprotein gene, complete cds | 6708 | _..............c... | 6725 | 89 |
| AY186747.1 | Human coxsackievirus B1 clone pAMP2.17 polyprotein gene, complete cds | 6708 | _..............c... | 6725 | 89 |
| AY186748.1 | Human coxsackievirus B1 clone pAMP2.22 polyprotein gene, complete cds | 6708 | _..............c... | 6725 | 89 |
| AY896765.1 | Human enterovirus B strain EV7-15936-01 from Azerbaijan polyprotein g | 6740 | _.....a............ | 6757 | 89 |
| X54521.1 | Swine vesicular disease virus complete genomic RNA | 6736 | .........c.....c... | 6754 | 89 |
| D00435.1 | SVDG Swine vesicular disease virus (STRAIN H/3 '76) genomic RNA, compl | 6737 | .........c.....c... | 6755 | 89 |
| AF268065.1 | Swine vesicular disease virus strain NET/1/92, complete genome | 6737 | .........c.....c... | 6755 | 89 |
| AY036578.1 | Human echovirus 7 strain UMMC polyprotein gene, complete cds | 6762 | ............g..c... | 6780 | 89 |
| AY302560.1 | Enterovirus 69 strain Toluca-1 complete genome | 6747 | .........c..g...... | 6765 | 89 |
| AY429470.1 | Swine vesicular disease virus strain HK'70, complete genome | 6737 | .........c.....c... | 6755 | 89 |
| AJ577594.1 | Human echovirus 11, isolate ROU-9191, complete virion genome | 6768 | .........c.....c... | 6786 | 89 |
| AY875692.1 | Human coxsackievirus B5 isolate 2000/CSF/KOR, complete genome | 6739 | ......a..c......... | 6757 | 89 |
| AY875692.1 | Human coxsackievirus B5 isolate 2000/CSF/KOR, complete genome | 3497 | _.c....a.c......... | 3514 | 78 |
| AY896763.1 | Human enterovirus B strain CBV3-18219-02 from Moldova polyprotein gen | 6711 | .........c.....c... | 6729 | 89 |
| AY896763.1 | Human enterovirus B strain CBV3-18219-02 from Moldova polyprotein gen | 3472 | ____...a.c......... | 3486 | 68 |
| EF634316.1 | Human echovirus 11 strain D207, complete genome | 6769 | .........c.....c... | 6787 | 89 |
| EU887279.1 | Swine vesicular disease virus SVDV02, complete genome | 6737 | .........c.....c... | 6755 | 89 |
| EU887280.1 | Swine vesicular disease virus SVDV03, complete genome | 6737 | .........c.....c... | 6755 | 89 |
| EU887281.1 | Swine vesicular disease virus SVDV04, complete genome | 6737 | .........c.....c... | 6755 | 89 |
| EU887282.1 | Swine vesicular disease virus SVDV, complete genome | 6737 | .........c.....c... | 6755 | 89 |
| HM777023.1 | Human echovirus 18 isolate Kor05-ECV18-054cn, complete genome | 6749 | .....a...c......... | 6767 | 89 |
| D00627.1 | CXA9CG Human coxsackievirus A9 genomic RNA, complete genome, strain: G | 6785 | .........c..g....._ | 6802 | 84 |
| AF114383.1 | Coxsackievirus B5 strain Faulkner, complete genome | 6736 | .........c.....c.._ | 6753 | 84 |
| AY302547.1 | Human echovirus 21 strain Farina complete genome | 6762 | .........c..g....._ | 6779 | 84 |
| DQ534205.1 | Human echovirus 30 isolate 14916net87, complete genome | 6765 | .....aa..........._ | 6782 | 84 |
| DQ534205.1 | Human echovirus 30 isolate 14916net87, complete genome | 3522 | ..c....a.c......... | 3540 | 84 |
| EF174469.1 | Human coxsackievirus B2 isolate KOR 04-279, complete genome | 6742 | .........c..g....._ | 6759 | 84 |
| D16364.1 | SVDMPS Swine vesicular disease virus gene for polyprotein, complete cd | 6737 | .........c.g...c... | 6755 | 84 |
| AY302540.1 | Human echovirus 14 strain Tow complete genome | 6786 | .....aa..c......... | 6804 | 84 |
| AJ577590.1 | Human echovirus 11, isolate FIN-0666, complete virion genome | 6768 | .........c..g..c... | 6786 | 84 |
| EF174468.1 | Human coxsackievirus B2 isolate KOR 04-243, complete genome | 6742 | ......a.gc......... | 6760 | 84 |
| EU887278.1 | Swine vesicular disease virus SVDV01, complete genome | 6737 | .........c.g...c... | 6755 | 84 |
| AB426611.1 | Human enterovirus 97 genomic RNA, complete genome, strain: DT94-0227 | 6748 | ...t..a..c......... | 6766 | 84 |
| AY843299.1 | Human enterovirus 81 strain USA/CA68-10389, complete genome | 6752 | _...........g..c.._ | 6768 | 78 |
| FJ194965.1 | Human enterovirus 71 strain EV71/GDSG/17/2008, complete genome | 5733 | __..c............__ | 5719 | 73 |
| GQ994989.1 | Human enterovirus 71 strain Chongqing1-09-China, complete genome | 5734 | __..c............__ | 5720 | 73 |
| GQ994990.1 | Human enterovirus 71 strain Chongqing2-09-China, complete genome | 5733 | __..t............__ | 5719 | 73 |
| FM955278.1 | Human coxsackievirus A17, complete genome, genomic RNA, isolate cCA17 | 2034 | .g..........g...a._ | 2017 | 78 |
| X67706.1 | Coxsackievirus B5 complete genome | 3495 | _.c....a.c......... | 3512 | 78 |
| AY843307.1 | Human enterovirus 97 strain BAN99-10355, complete genome | 3506 | _.c...aa........... | 3523 | 78 |
| AY876912.1 | Human enterovirus Ningbo3-02, complete genome | 5802 | __.........t....___ | 5789 | 68 |
| AY876913.1 | Human enterovirus Hangzhou13-02, complete genome | 5802 | __.........t....___ | 5789 | 68 |
| DQ443001.1 | Human coxsackievirus A24 isolate DSO-52/2005, complete genome | 5807 | __.........t....___ | 5794 | 68 |
| DQ443002.1 | Human coxsackievirus A24 isolate DSO-26/2005, complete genome | 5807 | __.........t....___ | 5794 | 68 |
| DQ902712.1 | Human enterovirus 84 isolate CIV2003-10603, complete genome | 6759 | ...tc.a..c......... | 6777 | 78 |
| AY697460.1 | Human enterovirus 90 polyprotein gene, complete cds | 3536 | ..c..t.a.c......... | 3554 | 78 |
| AY302543.1 | Human echovirus 17 strain CHHE-29 complete genome | 3513 | ____.a.a........... | 3527 | 68 |
| DQ246620.1 | Human echovirus 30 strain Echo30/Zhejiang/17/03/CSF, complete genome | 5738 | _.........gt....___ | 5724 | 68 |
| D00625.1 | POL2CG1 Human poliovirus 2 genomic RNA, complete genome | 3472 | _____.c..........._ | 3484 | 63 |
| AF546702.1 | Human coxsackievirus A21 strain Kuykendall, complete genome | 1995 | __.t...........____ | 1983 | 63 |
| AF465515.1 | Human coxsackievirus A21 strain Kuykendall, complete genome | 1995 | __.t...........____ | 1983 | 63 |
| HM185055.1 | Human echovirus 6 strain Echo6/Henan/116/2008, complete genome | 582 | ...t.........______ | 570 | 63 |
| AJ544513.1 | Human poliovirus 2 gene for polyprotein, genomic RNA, isolate 102050 | 4242 | ___..........._____ | 4252 | 57 |